Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs13053667 chr22:18443404 G/A 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs13053880 chr22:18443500 G/A 0 479 31.07 30.77 26.87 KM Plot
PRAD rs13057203 chr22:18446024 A/G 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs13073784 chr3:105432459 C/T 0.00012 488 30.8 30.98 55.72 KM Plot
PRAD rs13109067 chr4:74815 A/G 8.08E-6 493 30.87 30.97 39.23 KM Plot
PRAD rs13114862 chr4:75102 A/G 7.74E-6 494 30.8 30.97 39.23 KM Plot
PRAD rs13119939 chr4:73981 G/A 7.86E-6 494 30.73 32.22 39.23 KM Plot
PRAD rs13125667 chr4:74238 C/T 7.8E-6 494 30.33 32.7 39.23 KM Plot
PRAD rs13130581 chr4:70392 A/G 2.27E-9 492 30.73 32.5 33.23 KM Plot
PRAD rs13145153 chr4:79719 C/T 7.73E-6 494 39.23 30.8 30.87 KM Plot
PRAD rs13147163 chr4:77169 G/C 8.61E-6 489 30.87 30.97 39.23 KM Plot
PRAD rs13148549 chr4:74983 A/C 3.27E-5 494 30.78 31.53 31.75 KM Plot
PRAD rs13150405 chr4:74345939 G/A 0.000152 490 31.38 30.35 30.5 KM Plot
PRAD rs13154573 chr5:138148064 T/C 2.22E-6 485 31.27 30.57 22.47 KM Plot
PRAD rs13159685 chr5:179034114 C/A 2.72E-12 478 30.53 34.37 18.88 KM Plot